OpenMS  2.6.0
CruxAdapter

Identifies peptides in MS/MS spectra via Crux and tide-search.

pot. predecessor tools $ \longrightarrow $ CruxAdapter $ \longrightarrow $ pot. successor tools
any signal-/preprocessing tool
(in mzML format)
IDFilter or
any protein/peptide processing tool

Crux must be installed before this wrapper can be used. This should be the case for the installers.

The default parameters are set for a high resolution instrument. See the following publication:
Christopher Y. Park, Aaron A. Klammer, Lukas Käll, Michael J. MacCoss and William Stafford Noble. "Rapid and accurate peptide identification from tandem mass spectra." Journal of Proteome Research. 7(7):3022-3027, 2008. doi: 10.1021/pr800127y

The command line parameters of this tool are:

INI file documentation of this tool: