DeMixT |
Deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms |
DeMixT_DE |
Estimates the proportions of mixed samples for each mixing component |
DeMixT_GS |
Estimates the proportions of mixed samples for each mixing component using profile likelihood gene selection |
DeMixT_S2 |
Deconvolves expressions of each individual sample for unknown component |
Optimum_KernelC |
Kernel function for optimizing parameters and hidden variables in DeMixT |
simulate_2comp |
Function to simulate two-component test data |
simulate_3comp |
Function to simulate three-component mixed cell line test data |
test.data.2comp |
Simulated two-component test data |
test.data.3comp |
Simulated three-component mixed cell line test data |