libpappsomspp
Library for mass spectrometry
- g -
getAa() :
pappso::Peptide
getAaMass() :
pappso::AaBase
getAaPositionList() :
pappso::Peptide
getAccession() :
pappso::AaModification
,
pappso::GrpProtein
,
pappso::Protein
getAlignedRetentionTimeVector() :
pappso::MsRunRetentionTime< T >
getAminoAcidCharList() :
pappso::AaBase
getArea() :
pappso::TracePeak
getBackRetentionTimeReference() :
pappso::MsRunRetentionTime< T >
getBestPeakIterator() :
pappso::PeptideIsotopeSpectrumMatch
,
pappso::PeptideSpectrumMatch
getBinningType() :
pappso::MzIntegrationParams
getBins() :
pappso::MassSpectrumCombiner
getByIntensityRatio() :
pappso::PeptideNaturalIsotopeList
getByIsotopeNumber() :
pappso::PeptideNaturalIsotopeList
getCharge() :
pappso::PeakIonMatch
,
pappso::PeptideNaturalIsotopeAverage
,
pappso::XicPeptideFragmentIonNaturalIsotope
,
pappso::XicPeptideInterface
getChargeMinimalFractionalPart() :
pappso::MassSpecTracePlotWidget
getChargeStateEnvelopePeakSpan() :
pappso::MassSpecTracePlotWidget
getCIDionList() :
pappso::PeptideFragmentIonListBase
getClosestPrecursorIdByMz() :
pappso::TimsData
getCoefficientOfDetermination() :
pappso::LinearRegression
getColorMapPlotConfig() :
pappso::BaseColorMapPlotWidget
getCommonDeltaRt() :
pappso::MsRunRetentionTime< T >
getComponents() :
pappso::PeptideNaturalIsotopeAverage
getConstAa() :
pappso::Peptide
getContext() :
pappso::BasePlotWidget
getCount() :
pappso::GrpProtein
getDaltonInstance() :
pappso::MassSpectrumCombinerFactory
,
pappso::PrecisionFactory
getDecimalPlaces() :
pappso::MassDataCombinerInterface
,
pappso::MzIntegrationParams
getDeltaMass() :
pappso::PeptideRawFragmentMasses
getDescription() :
pappso::GrpProtein
,
pappso::Protein
getDetectionThresholdOnMaxmin() :
pappso::TraceDetectionZivy
getDetectionThresholdOnMinmax() :
pappso::TraceDetectionZivy
getDriftTime() :
pappso::TimsFrameBase
getDtInMilliSeconds() :
pappso::QualifiedMassSpectrum
getDynamicRange() :
pappso::FilterRescaleY
,
pappso::XtandemSpectrumProcess
getETDionList() :
pappso::PeptideFragmentIonListBase
getExcludeParent() :
pappso::XtandemSpectrumProcess
getExcludeParentNeutralLoss() :
pappso::XtandemSpectrumProcess
getFileFormat() :
pappso::MsFileAccessor
,
pappso::MsFileReader
,
pappso::PwizMsFileReader
,
pappso::TimsMsFileReader
,
pappso::XyMsFileReader
getFileName() :
pappso::MsFileAccessor
,
pappso::MsRunId
getFilterMorphoMedian() :
pappso::FilterMorphoBackground
getFilterMorphoMinMax() :
pappso::FilterMorphoBackground
getFirst() :
pappso::FilterOboPsiModSink
getFirstAccession() :
pappso::GrpSubGroup
getFormula() :
pappso::PeptideInterface
getFrontRetentionTimeReference() :
pappso::MsRunRetentionTime< T >
getGreatestMz() :
pappso::MzIntegrationParams
getGroupingId() :
pappso::GrpGroup
,
pappso::GrpPeptide
,
pappso::GrpProtein
,
pappso::GrpSubGroup
getGroupList() :
pappso::GrpMapPeptideToGroup
getGroupNumber() :
pappso::GrpGroup
,
pappso::GrpPeptide
,
pappso::GrpProtein
,
pappso::GrpSubGroup
getGrpGroupSpList() :
pappso::GrpExperiment
getGrpPeptideList() :
pappso::GrpPeptideSet
getGrpPeptideSet() :
pappso::GrpGroup
getGrpProteinList() :
pappso::GrpSubGroup
getGrpProteinSp() :
pappso::GrpExperiment
getGrpProteinSpList() :
pappso::GrpExperiment
getGrpSubGroupSpList() :
pappso::GrpGroup
getHalfWindowSize() :
pappso::FilterLocalMaximum
,
pappso::FilterMorphoAntiSpike
,
pappso::FilterMorphoWindowBase
getHyperscore() :
pappso::XtandemHyperscore
,
pappso::XtandemHyperscoreBis
getId() :
pappso::TimsFrameBase
getIndexNodeMap() :
pappso::MsRunDataSetTree
getInnermostRangeX() :
pappso::BasePlotWidget
getInnermostRangeY() :
pappso::BasePlotWidget
getInstance() :
pappso::AaModification
,
pappso::MsRunXicExtractorFactory
,
pappso::MzCalibrationStore
getInstanceCustomizedMod() :
pappso::AaModification
getInstanceMutation() :
pappso::AaModification
getInstanceXtandemMod() :
pappso::AaModification
getIntensityAxisP() :
pappso::XicWidget
getIntensityRatio() :
pappso::PeptideNaturalIsotope
,
pappso::PeptideNaturalIsotopeAverage
getIntensityRatioPerIsotopeNumber() :
pappso::PeptideNaturalIsotopeList
getIntercept() :
pappso::LinearRegression
getInternalCterModification() :
pappso::Aa
,
pappso::Peptide
getInternalNterModification() :
pappso::Aa
,
pappso::Peptide
getIonIsotopeRatioScore() :
pappso::IonIsotopeRatioScore
getIonList() :
pappso::PeptideFragmentIonListBase
getIonScore() :
pappso::XtandemSpectrumProcess
getIonTypeCountArray() :
pappso::PeptideSpectrumMatch
getIsotopeMap() :
pappso::PeptideNaturalIsotope
getIsotopeNumber() :
pappso::PeptideNaturalIsotope
,
pappso::PeptideNaturalIsotopeAverage
getIsotopeRank() :
pappso::PeptideNaturalIsotopeAverage
getLeftBoundary() :
pappso::TracePeak
getLetter() :
pappso::AaBase
getLexicalOrderedString() :
pappso::Utils
getLiAbsoluteString() :
pappso::Peptide
getMass() :
pappso::Aa
,
pappso::AaBase
,
pappso::AaModification
,
pappso::Ion
,
pappso::Peptide
,
pappso::PeptideFragment
,
pappso::PeptideFragmentIon
,
pappso::PeptideNaturalIsotope
,
pappso::Protein
getMassSpectrumCstSPtr() :
pappso::QualifiedMassSpectrum
,
pappso::TimsData
,
pappso::TimsFrame
getMassSpectrumCstSPtrByRawIndex() :
pappso::TimsData
getMassSpectrumId() :
pappso::QualifiedMassSpectrum
getMassSpectrumSPtr() :
pappso::QualifiedMassSpectrum
,
pappso::TimsFrame
,
pappso::TimsFrameBase
getMatchedIons() :
pappso::XtandemHyperscore
,
pappso::XtandemHyperscoreBis
getMatchPrecursorIdByKo() :
pappso::TimsData
getMaxHalfEdgeWindows() :
pappso::FilterMorphoMax
getMaxMinHalfEdgeWindows() :
pappso::FilterMorphoMaxMin
,
pappso::TraceDetectionZivy
getMaxXicElement() :
pappso::TracePeak
getMeanHalfEdgeWindows() :
pappso::FilterMorphoMean
getMids() :
ralab::base::resample::Convert2Dense
getMinHalfEdgeWindows() :
pappso::FilterMorphoMin
getMinimumMz() :
pappso::XtandemSpectrumProcess
getMinMaxHalfEdgeWindows() :
pappso::FilterMorphoMinMax
,
pappso::TraceDetectionZivy
getMiscleavage() :
pappso::Enzyme
getModificationList() :
pappso::Aa
getModificationPositionList() :
pappso::Peptide
,
pappso::PeptideModificatorBase
getMorpheusScore() :
pappso::MorpheusScore
getMostIntensePeakBetween() :
pappso::QCPSpectrum
getMs1RetentionTimeVector() :
pappso::MsRunRetentionTime< T >
getMs2BuiltinCentroid() :
pappso::TimsData
getMs2FiltersOptions() :
pappso::XtandemPresetSaxHandler
getMs2FilterSuiteString() :
pappso::TandemWrapperRun
getMsLevel() :
pappso::QualifiedMassSpectrum
,
pappso::TimsFrameBase
getMsLevelBySpectrumIndex() :
pappso::TimsData
getMsLevelCount() :
pappso::MsRunSimpleStatistics
getMsPointDistance() :
pappso::Xic
getMsRunId() :
pappso::MsRunReader
,
pappso::MsRunXicExtractorInterface
getMsRunIdCstSPtr() :
pappso::MassSpectrumId
getMsRunIds() :
pappso::MsFileAccessor
,
pappso::MsFileReader
,
pappso::PwizMsFileReader
,
pappso::TimsMsFileReader
,
pappso::XyMsFileReader
getMsRunReaderSPtr() :
pappso::MsRunRetentionTime< T >
getMsRunReaderSPtrByRunId() :
pappso::MsFileAccessor
getMz() :
pappso::Ion
,
pappso::MzRange
,
pappso::PeptideNaturalIsotopeAverage
,
pappso::QualifiedXic
getMzCalibrationInterfaceSPtr() :
pappso::TimsFrameBase
getMzFormat() :
pappso::MsRunId
getMzFromTofIndex() :
pappso::MzCalibrationInterface
,
pappso::MzCalibrationModel1
,
pappso::MzCalibrationModel1Cached
getMzInstance() :
pappso::MassSpectrumCombinerFactory
,
pappso::PrecisionFactory
getMzShift() :
pappso::MzIntegrationParams
getMzSortedPrecursorDataChargeValuesAsString() :
pappso::QualifiedMassSpectrum
getMzSortedPrecursorDataMzValuesAsString() :
pappso::QualifiedMassSpectrum
getName() :
pappso::AaModification
,
pappso::PeptideFragmentIon
,
pappso::PeptideInterface
,
pappso::XicWidget
getNativeId() :
pappso::MassSpectrumId
getNbrPeaks() :
pappso::TimsFrame
,
pappso::TimsFrameBase
getNearestPeakBetween() :
pappso::QCPSpectrum
getNeutralLossMass() :
pappso::XtandemSpectrumProcess
getNeutralLossWindowDalton() :
pappso::XtandemSpectrumProcess
getNmostIntense() :
pappso::XtandemSpectrumProcess
getNominal() :
pappso::PrecisionBase
getNrmsd() :
pappso::LinearRegression
getNToppeaks() :
ralab::base::ms::PeakPicker< TReal, TIntegrator >
getNumberOfAtom() :
pappso::Aa
,
pappso::AaBase
,
pappso::AaModification
,
pappso::AtomNumberInterface
,
pappso::Peptide
,
pappso::PeptideFragment
,
pappso::PeptideFragmentIon
,
pappso::PeptideNaturalIsotope
getNumberOfCorrectedValues() :
pappso::MsRunRetentionTime< T >
getNumberOfIsotope() :
pappso::Aa
,
pappso::AaBase
,
pappso::AaModification
,
pappso::AtomNumberInterface
,
pappso::Peptide
,
pappso::PeptideFragment
,
pappso::PeptideFragmentIon
,
pappso::PeptideNaturalIsotope
getNumberOfModification() :
pappso::Aa
,
pappso::Peptide
getNumberOfNeutralPhosphoLoss() :
pappso::PeptideFragmentIon
getNumberOfPoints() :
pappso::FilterGreatestY
,
pappso::FilterGreatestYperWindow
getNumberOfThreads() :
pappso::XtandemPresetSaxHandler
getOboPsiModTermList() :
pappso::FilterOboPsiModSink
getOne() :
pappso::FilterOboPsiModSink
getOneOverK0Transformation() :
pappso::TimsFrameBase
getOriginalMsDataFileName() :
pappso::XtandemInputSaxHandler
getOriginalTandemOutputFileName() :
pappso::XtandemInputSaxHandler
getOriginalTandemPresetFileName() :
pappso::XtandemInputSaxHandler
getOutermostRangeX() :
pappso::BasePlotWidget
getOutermostRangeY() :
pappso::BasePlotWidget
getParameters() :
pappso::FilterSavitzkyGolay
getParameterValue() :
pappso::QualifiedMassSpectrum
getParent() :
pappso::MsRunDataSetTreeNode
getPeak() :
pappso::PeakIonMatch
getPeakArea() :
ralab::base::ms::PeakPicker< TReal, TIntegrator >
getPeakIonIsotopeMatchList() :
pappso::PeptideIsotopeSpectrumMatch
getPeakMass() :
ralab::base::ms::PeakPicker< TReal, TIntegrator >
getPen() :
pappso::BasePlotWidget
getPeptideFragmentIonList() :
pappso::PeptideFragmentIonListBase
getPeptideFragmentIonSp() :
pappso::PeakIonMatch
,
pappso::PeptideFragmentIonListBase
,
pappso::XicPeptideFragmentIon
,
pappso::XicPeptideFragmentIonNaturalIsotope
getPeptideFragmentList() :
pappso::PeptideFragmentIonListBase
getPeptideFragmentSp() :
pappso::PeptideFragmentIon
getPeptideInterfaceSp() :
pappso::PeptideNaturalIsotopeAverage
,
pappso::PeptideNaturalIsotopeList
getPeptideIonColor() :
pappso::PeptideFragmentIon
getPeptideIonDirection() :
pappso::PeakIonMatch
,
pappso::PeptideFragment
,
pappso::PeptideFragmentIon
getPeptideIonDirectionName() :
pappso::PeptideFragment
getPeptideIonName() :
pappso::PeptideFragmentIon
getPeptideIonType() :
pappso::PeakIonMatch
,
pappso::PeptideFragmentIon
getPeptideNaturalIsotopeAverageSp() :
pappso::PeakIonIsotopeMatch
,
pappso::XicPeptideFragmentIonNaturalIsotope
getPeptideSet() :
pappso::GrpSubGroup
getPeptideSp() :
pappso::PeptideFragment
,
pappso::PeptideFragmentIonListBase
getPhosphorylationNumber() :
pappso::PeptideFragmentIonListBase
getPlottingColor() :
pappso::BaseColorMapPlotWidget
,
pappso::BasePlotWidget
getPlusCombiner() :
pappso::MassSpectrumCombinerFactory
getPpmInstance() :
pappso::MassSpectrumCombinerFactory
,
pappso::PrecisionFactory
getPrecision() :
pappso::MzIntegrationParams
,
pappso::PeptideNaturalIsotopeAverage
,
pappso::PrecisionWidget
getPrecisionPtrFractionInstance() :
pappso::PrecisionFactory
getPrecisionPtrInstance() :
pappso::PrecisionFactory
getPrecursorCharge() :
pappso::QualifiedMassSpectrum
getPrecursorDataChargeValuesAsString() :
pappso::QualifiedMassSpectrum
getPrecursorDataMzValuesAsString() :
pappso::QualifiedMassSpectrum
getPrecursorIntensity() :
pappso::QualifiedMassSpectrum
getPrecursorIonData() :
pappso::QualifiedMassSpectrum
getPrecursorIonDataSortedWithMz() :
pappso::QualifiedMassSpectrum
getPrecursorMz() :
pappso::QualifiedMassSpectrum
getPrecursorNativeId() :
pappso::QualifiedMassSpectrum
getPrecursorScanNumber() :
pappso::MzxmlOutput
getPrecursorsFromMzRtCharge() :
pappso::TimsData
getPrecursorsIDFromMzRt() :
pappso::TimsMsRunReaderMs2
getPrecursorSpectrumIndex() :
pappso::QualifiedMassSpectrum
getProblem() :
ralab::base::ms::SimplePicker< TReal >
getPwizSpectrumPtr() :
pappso::PwizMsRunReader
getQRegExpRecognitionSite() :
pappso::Enzyme
getQualifiedMassSpectrum() :
pappso::MsRunDataSetTreeNode
getQualifiedMassSpectrumByRawIndex() :
pappso::TimsData
getQualifiedMs1MassSpectrumByPrecursorId() :
pappso::TimsData
getQualifiedMs2MassSpectrumByPrecursorId() :
pappso::TimsData
getRange() :
pappso::BasePlotWidget
getRangeX() :
pappso::BasePlotWidget
getRangeY() :
pappso::BasePlotWidget
getRank() :
pappso::GrpPeptide
,
pappso::GrpProtein
getRawIndexFromCoordinate() :
pappso::TimsData
getRawTraceSPtr() :
pappso::TimsFrame
getRefineSpectrumModel() :
pappso::XtandemSpectrumProcess
getRemoveIsotope() :
pappso::XtandemSpectrumProcess
getResampledIntensity() :
ralab::base::ms::PeakPicker< TReal, TIntegrator >
getResampledMZ() :
ralab::base::ms::PeakPicker< TReal, TIntegrator >
getResInstance() :
pappso::MassSpectrumCombinerFactory
,
pappso::PrecisionFactory
getRetentionTimeFromSecondsToLocal() :
pappso::QCPXic
getRightBoundary() :
pappso::TracePeak
getRmsd() :
pappso::LinearRegression
getRootNodes() :
pappso::MsRunDataSetTree
getRtAxisP() :
pappso::XicWidget
getRtInMinutes() :
pappso::QualifiedMassSpectrum
getRtInSeconds() :
pappso::QualifiedMassSpectrum
getRunId() :
pappso::MsRunId
getSampleName() :
pappso::MsRunId
getSavGolParams() :
pappso::MzIntegrationParams
getScaleFactorY() :
pappso::FilterScaleFactorY
getScanCoordinateFromRawIndex() :
pappso::TimsData
getScanIndexList() :
pappso::TimsFrame
getScanIntensities() :
pappso::TimsFrame
getScanNumber() :
pappso::MzxmlOutput
getScanNumberFromNativeId() :
pappso::MzxmlOutput
getScanNumFromOneOverK0() :
pappso::TimsFrameBase
getScanOffset() :
pappso::TimsFrame
getSeamarks() :
pappso::MsRunRetentionTime< T >
getSeamarksReferences() :
pappso::MsRunRetentionTime< T >
getSequence() :
pappso::GrpPeptide
,
pappso::Peptide
,
pappso::PeptideFragment
,
pappso::PeptideFragmentIon
,
pappso::PeptideInterface
,
pappso::PeptideNaturalIsotope
,
pappso::Protein
getSequenceByIndex() :
pappso::FastaFileIndexer
,
pappso::FastaFileIndexerInterface
getSequenceLi() :
pappso::PeptideInterface
getSliceNumber() :
pappso::MsRunSlice
getSlope() :
pappso::LinearRegression
getSmallestMz() :
pappso::MzIntegrationParams
getSmoothedIntensity() :
ralab::base::ms::PeakPicker< TReal, TIntegrator >
getSmoothingHalfEdgeWindows() :
pappso::TraceDetectionMoulon
,
pappso::TraceDetectionZivy
getSpectrum() :
pappso::MsRunSlice
getSpectrumCount() :
pappso::MsRunDataSetTree
getSpectrumIndex() :
pappso::MassSpectrumId
getSpectrumIndexFromScanNumber() :
pappso::MsRunReaderScanNumberMultiMap
getSubGroupNumber() :
pappso::GrpProtein
,
pappso::GrpSubGroup
getSubGroupSet() :
pappso::GrpMapPeptideToSubGroupSet
getSubGroupSpList() :
pappso::GrpGroup
getThresholdX() :
pappso::FilterResampleKeepGreater
getTicStart() :
pappso::TraceDetectionMoulon
getTicStop() :
pappso::TraceDetectionMoulon
getTime() :
pappso::TimsFrameBase
getTimsDataSPtr() :
pappso::TimsMsRunReaderMs2
getTimsFrameBaseCstSPtr() :
pappso::TimsData
getTimsFrameBaseCstSPtrCached() :
pappso::TimsData
getTimsFrameCstSPtr() :
pappso::TimsData
getTimsFrameCstSPtrCached() :
pappso::TimsData
getTimsFrameSPtrByOffset() :
pappso::TimsBinDec
getTimsMS1FrameIdRange() :
pappso::TimsData
getTofFromTofIndex() :
pappso::MzCalibrationInterface
getTofIndexFromMz() :
pappso::MzCalibrationInterface
,
pappso::MzCalibrationModel1
getTotalCount() :
pappso::MsRunSimpleStatistics
getTotalMatchedIons() :
pappso::XtandemHyperscoreBis
getTotalNumberOfPrecursors() :
pappso::TimsData
getTotalNumberOfScans() :
pappso::TimsData
getTraceFromCumulatedScans() :
pappso::TimsFrameBase
getTraceFromCumulatedScansBuiltinCentroid() :
pappso::TimsFrameBase
getValueRangeOnKeyRange() :
pappso::BaseTracePlotWidget
getValuesX() :
pappso::BaseTracePlotWidget
getValuesY() :
pappso::BaseTracePlotWidget
getVoltageTransformation() :
pappso::TimsFrameBase
getWindowValue() :
pappso::FilterMorphoMax
,
pappso::FilterMorphoMean
,
pappso::FilterMorphoMedian
,
pappso::FilterMorphoMin
,
pappso::FilterMorphoSum
,
pappso::FilterMorphoWindowBase
getXicCstSPtr() :
pappso::MsRunXicExtractor
,
pappso::MsRunXicExtractorDisk
,
pappso::MsRunXicExtractorInterface
,
pappso::QualifiedXic
,
pappso::XicWidget
getXicCstSPtrList() :
pappso::MsRunXicExtractor
,
pappso::MsRunXicExtractorDisk
,
pappso::MsRunXicExtractorInterface
getXicFromPwizMSDataFile() :
pappso::MsRunXicExtractor
getXicSPtr() :
pappso::QualifiedXic
getXmlId() :
pappso::MsRunId
getXtandemPredictedIonIntensityFactor() :
pappso::XtandemHyperscore
,
pappso::XtandemHyperscoreBis
getYatX() :
pappso::BaseTracePlotWidget
getYfromX() :
pappso::LinearRegression
GraphicDeviceWidget() :
GraphicDeviceWidget
groupingProtein() :
pappso::GrpGroupingMonitor
,
pappso::GrpGroupingMonitorInterface
GrpExperiment() :
pappso::GrpExperiment
GrpGroup() :
pappso::GrpGroup
GrpGroupingMonitor() :
pappso::GrpGroupingMonitor
GrpMapPeptideToGroup() :
pappso::GrpMapPeptideToGroup
GrpMapPeptideToSubGroupSet() :
pappso::GrpMapPeptideToSubGroupSet
GrpPeptide() :
pappso::GrpPeptide
GrpPeptideSet() :
pappso::GrpPeptideSet
GrpProtein() :
pappso::GrpProtein
GrpSubGroup() :
pappso::GrpSubGroup
GrpSubGroupSet() :
pappso::GrpSubGroupSet
Generated on Fri Jan 8 2021 14:38:15 for libpappsomspp by
1.8.20