libpappsomspp
Library for mass spectrometry
peptidemodificatortee.h
Go to the documentation of this file.
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/*******************************************************************************
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* Copyright (c) 2016 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
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*
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* This file is part of the PAPPSOms++ library.
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*
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* PAPPSOms++ is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms++ is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
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*
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* Contributors:
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* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
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*implementation
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******************************************************************************/
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#pragma once
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#include "
enzymeproductinterface.h
"
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#include "../pappsoexception.h"
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namespace
pappso
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{
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class
PMSPP_LIB_DECL
PeptideModificatorTee
:
public
PeptideModificatorInterface
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{
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public
:
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PeptideModificatorTee
();
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PeptideModificatorTee
(
const
PeptideModificatorTee
&other);
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virtual
~
PeptideModificatorTee
();
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void
setPeptideSp(std::int8_t sequence_database_id,
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const
ProteinSp
&protein_sp,
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bool
is_decoy,
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const
PeptideSp
&peptide_sp_original,
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unsigned
int
start,
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bool
is_nter,
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unsigned
int
missed_cleavage_number,
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bool
semi_enzyme)
override
;
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void
addModificator(
PeptideModificatorInterface
*p_peptide_mod);
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private
:
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std::list<PeptideModificatorInterface *>
m_peptideModPtrList
;
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};
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}
// namespace pappso
enzymeproductinterface.h
pappso::PeptideModificatorTee
Definition:
peptidemodificatortee.h:35
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition:
exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition:
aa.cpp:39
pappso::PeptideModificatorInterface
Definition:
enzymeproductinterface.h:65
pappso::ProteinSp
std::shared_ptr< const Protein > ProteinSp
shared pointer on a Protein object
Definition:
protein.h:43
pappso::PeptideModificatorTee::m_peptideModPtrList
std::list< PeptideModificatorInterface * > m_peptideModPtrList
Definition:
peptidemodificatortee.h:54
pappso::PeptideSp
std::shared_ptr< const Peptide > PeptideSp
Definition:
aamodification.h:47
pappsomspp
protein
peptidemodificatortee.h
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