18 #ifndef __PILEUP_ELEMENT_BASE_QUAL_H__
19 #define __PILEUP_ELEMENT_BASE_QUAL_H__
22 #include "PileupElement.h"
41 virtual void reset(int32_t refPosition);
44 static const char UNSET_QUAL = 0xFF;
virtual void reset(int32_t refPosition)
Resets the entry, setting the new position associated with this element.
This class inherits from the base class and stores base and qualities.
virtual void analyze()
Perform the analysis associated with this class.
Class providing an easy to use interface to get/set/operate on the fields in a SAM/BAM record.
This is a base class pileup component, representing the information for one reference position.
virtual void addEntry(SamRecord &record)
Add an entry to this pileup element.
- bam
- PileupElementBaseQual.h