18 #ifndef __SAM_STATISTICS_H__
19 #define __SAM_STATISTICS_H__
22 #include "SamRecord.h"
34 bool updateStatistics(
SamRecord& samRecord);
47 uint64_t myMappedReadCount;
50 uint64_t myPairedReadCount;
53 uint64_t myProperPairedReadCount;
56 uint64_t myDupReadCount;
59 uint64_t myQCFailureReadCount;
68 uint64_t myMappedReadBases;