libStatGen Software
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Class that tracks the composition of base by read location. More...
#include <BaseComposition.h>
Public Member Functions | |
BaseComposition () | |
Constructor. | |
bool | updateComposition (unsigned int rawSequenceCharIndex, char baseChar) |
Update the composition for the specified index with the specified character. More... | |
BaseAsciiMap::SPACE_TYPE | getSpaceType () |
Get the space type for this composition. | |
void | resetBaseMapType () |
Reset the base map type for this composition. | |
void | setBaseMapType (BaseAsciiMap::SPACE_TYPE spaceType) |
Set the base map type for this composition. | |
void | print () |
Print the composition. | |
void | clear () |
Clear the composition stored in the base count vector. | |
Class that tracks the composition of base by read location.
Definition at line 27 of file BaseComposition.h.
bool BaseComposition::updateComposition | ( | unsigned int | rawSequenceCharIndex, |
char | baseChar | ||
) |
Update the composition for the specified index with the specified character.
Definition at line 32 of file BaseComposition.cpp.
References BaseAsciiMap::getBaseIndex(), and BaseAsciiMap::resetPrimerCount().