libStatGen Software  1
Tabix Member List

This is the complete list of members for Tabix, including all inherited members.

Format enum name (defined in Tabix)Tabix
FORMAT_GENERIC enum value (defined in Tabix)Tabix
FORMAT_SAM enum value (defined in Tabix)Tabix
FORMAT_VCF enum value (defined in Tabix)Tabix
getBinsForRegion(uint32_t start, uint32_t end, bool binMap[MAX_NUM_BINS+1]) (defined in IndexBase)IndexBaseprotectedstatic
getFormat() const (defined in Tabix)Tabixinline
getMinOffsetFromLinearIndex(int32_t refID, uint32_t position, uint64_t &minOffset) const (defined in IndexBase)IndexBase
getNumRefs() constIndexBase
getRefName(unsigned int indexNum) constTabix
getStartPos(const char *refName, int32_t start, uint64_t &fileStartPos) constTabix
IndexBase() (defined in IndexBase)IndexBase
LINEAR_INDEX_SHIFT (defined in IndexBase)IndexBaseprotectedstatic
MAX_NUM_BINS (defined in IndexBase)IndexBaseprotectedstatic
MAX_POSITION (defined in IndexBase)IndexBaseprotectedstatic
myRefs (defined in IndexBase)IndexBaseprotected
n_ref (defined in IndexBase)IndexBaseprotected
readIndex(const char *filename)Tabixvirtual
resetIndex()Tabixvirtual
Tabix() (defined in Tabix)Tabix
~IndexBase() (defined in IndexBase)IndexBasevirtual
~Tabix() (defined in Tabix)Tabixvirtual