Package picard.util

Class SequenceDictionaryUtils.SamSequenceRecordsIterator

  • All Implemented Interfaces:
    Iterator<htsjdk.samtools.SAMSequenceRecord>
    Enclosing class:
    SequenceDictionaryUtils

    public static class SequenceDictionaryUtils.SamSequenceRecordsIterator
    extends Object
    implements Iterator<htsjdk.samtools.SAMSequenceRecord>
    • Constructor Detail

      • SamSequenceRecordsIterator

        public SamSequenceRecordsIterator​(File referenceSequence,
                                          boolean truncateNamesAtWhitespace)
    • Method Detail

      • setGenomeAssembly

        public void setGenomeAssembly​(String genomeAssembly)
      • setUri

        public void setUri​(String uri)
      • setSpecies

        public void setSpecies​(String species)
      • hasNext

        public boolean hasNext()
        Specified by:
        hasNext in interface Iterator<htsjdk.samtools.SAMSequenceRecord>
      • next

        public htsjdk.samtools.SAMSequenceRecord next()
        Specified by:
        next in interface Iterator<htsjdk.samtools.SAMSequenceRecord>