Class CollectAlignmentSummaryMetrics.CollectAlignmentRefArgCollection

    • Field Detail

      • REFERENCE_SEQUENCE

        @Argument(shortName="R",
                  doc="Reference sequence file. Note that while this argument isn\'t required, without it a small subset (MISMATCH-related) of the metrics cannot be calculated. Note also that if a reference sequence is provided, it must be accompanied by a sequence dictionary.",
                  optional=true)
        public File REFERENCE_SEQUENCE
    • Constructor Detail

      • CollectAlignmentRefArgCollection

        public CollectAlignmentRefArgCollection()