Package picard.vcf

Class GenotypeConcordance.Alleles

  • Enclosing class:
    GenotypeConcordance

    protected static class GenotypeConcordance.Alleles
    extends Object
    A simple structure to return the results of getAlleles. NB: truthAllele1/2 and callAllele1/2 may be null if no first or second allele was present respectively.
    • Field Detail

      • allAlleles

        public final picard.vcf.OrderedSet<String> allAlleles
      • truthAllele1

        public final String truthAllele1
      • truthAllele2

        public final String truthAllele2
      • callAllele1

        public final String callAllele1
      • callAllele2

        public final String callAllele2
    • Constructor Detail

      • Alleles

        public Alleles​(picard.vcf.OrderedSet<String> allAlleles,
                       String truthAllele1,
                       String truthAllele2,
                       String callAllele1,
                       String callAllele2)
    • Method Detail

      • asList

        public List<htsjdk.variant.variantcontext.Allele> asList()
      • truthAlleles

        public List<htsjdk.variant.variantcontext.Allele> truthAlleles()
      • callAlleles

        public List<htsjdk.variant.variantcontext.Allele> callAlleles()