Package picard.filter
Class CountingMapQFilter
- java.lang.Object
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- picard.filter.CountingFilter
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- picard.filter.CountingMapQFilter
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- All Implemented Interfaces:
htsjdk.samtools.filter.SamRecordFilter
public class CountingMapQFilter extends CountingFilter
Counting filter that discards reads below a configurable mapping quality threshold.
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Constructor Summary
Constructors Constructor Description CountingMapQFilter(int minMapq)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
reallyFilterOut(htsjdk.samtools.SAMRecord record)
Return true if we are to filter this record out, false otherwise.-
Methods inherited from class picard.filter.CountingFilter
filterOut, filterOut, getFilteredBases, getFilteredRecords
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Method Detail
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reallyFilterOut
public boolean reallyFilterOut(htsjdk.samtools.SAMRecord record)
Description copied from class:CountingFilter
Return true if we are to filter this record out, false otherwise.- Specified by:
reallyFilterOut
in classCountingFilter
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