Class CollectHiSeqXPfFailMetrics.PFFailDetailedMetric

  • Enclosing class:
    CollectHiSeqXPfFailMetrics

    @DocumentedFeature(groupName="Metrics",
                       summary="Metrics")
    public static class CollectHiSeqXPfFailMetrics.PFFailDetailedMetric
    extends htsjdk.samtools.metrics.MetricBase
    a metric class for describing FP failing reads from an Illumina HiSeqX lane *
    • Field Detail

      • TILE

        public Integer TILE
        The Tile that is described by this metric
      • X

        public int X
        The X coordinate of the read within the tile
      • Y

        public int Y
        The Y coordinate of the read within the tile
      • NUM_N

        public int NUM_N
        The number of Ns found in this read
      • NUM_Q_GT_TWO

        public int NUM_Q_GT_TWO
        The number of Quality scores greater than 2 found in this read