Package picard.sam.SamErrorMetric
Class ReadBaseStratification.MismatchesInReadStratifier
- java.lang.Object
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- picard.sam.SamErrorMetric.ReadBaseStratification.MismatchesInReadStratifier
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- All Implemented Interfaces:
ReadBaseStratification.RecordAndOffsetStratifier<Integer>
- Enclosing class:
- ReadBaseStratification
public static class ReadBaseStratification.MismatchesInReadStratifier extends Object implements ReadBaseStratification.RecordAndOffsetStratifier<Integer>
Stratifies according to the overall mismatches (fromSAMTag.NM
) that the read has against the reference, NOT including the current base.
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Constructor Summary
Constructors Constructor Description MismatchesInReadStratifier()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getSuffix()
Integer
stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
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Method Detail
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stratify
public Integer stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
- Specified by:
stratify
in interfaceReadBaseStratification.RecordAndOffsetStratifier<Integer>
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getSuffix
public String getSuffix()
- Specified by:
getSuffix
in interfaceReadBaseStratification.RecordAndOffsetStratifier<Integer>
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