Class IlluminaBPMLocusEntry


  • public class IlluminaBPMLocusEntry
    extends Object
    A simple class to represent a locus entry in an Illumina Bead Pool Manifest (BPM) file
    • Constructor Detail

      • IlluminaBPMLocusEntry

        public IlluminaBPMLocusEntry()
    • Method Detail

      • getVersion

        public int getVersion()
      • getIlmnId

        public String getIlmnId()
      • getName

        public String getName()
      • getIndex

        public int getIndex()
      • getSnp

        public String getSnp()
      • getChrom

        public String getChrom()
      • getPloidy

        public String getPloidy()
      • getSpecies

        public String getSpecies()
      • getMapInfo

        public int getMapInfo()
      • getCustomerStrand

        public String getCustomerStrand()
      • getAddressA

        public int getAddressA()
      • getAlleleAProbeSeq

        public String getAlleleAProbeSeq()
      • getAddressB

        public int getAddressB()
      • getAlleleBProbeSeq

        public String getAlleleBProbeSeq()
      • getGenomeBuild

        public String getGenomeBuild()
      • getSource

        public String getSource()
      • getSourceVersion

        public String getSourceVersion()
      • getSourceSeq

        public String getSourceSeq()
      • getTopGenomicSeq

        public String getTopGenomicSeq()
      • getExpClusters

        public int getExpClusters()
      • isIntensityOnly

        public boolean isIntensityOnly()
      • getAssayType

        public int getAssayType()
      • getFracA

        public float getFracA()
      • getFracC

        public float getFracC()
      • getFracT

        public float getFracT()
      • getFracG

        public float getFracG()
      • getRefStrand

        public htsjdk.tribble.annotation.Strand getRefStrand()
      • getNormalizationId

        public int getNormalizationId()