Class ReadData


  • public class ReadData
    extends Object
    Data for a single end of a paired-end read, a barcode read, or for the entire read if not paired end.
    • Constructor Detail

      • ReadData

        public ReadData()
      • ReadData

        public ReadData​(ReadType readType)
    • Method Detail

      • getBases

        public byte[] getBases()
        Returns:
        ASCII byte representation of bases.
      • setBases

        public void setBases​(byte[] bases)
      • getQualities

        public byte[] getQualities()
        Returns:
        Phred-binary scaled qualities. E.g. Q20 is the byte with value==20.
      • setQualities

        public void setQualities​(byte[] qualities)
      • getReadType

        public ReadType getReadType()
      • setReadType

        public void setReadType​(ReadType readType)