Class ReadBaseStratification.IndelsInReadStratifier

    • Constructor Detail

      • IndelsInReadStratifier

        public IndelsInReadStratifier()
    • Method Detail

      • stratify

        public Integer stratify​(htsjdk.samtools.SAMRecord samRecord)
        Returns the number of bases associated with I and D CIGAR elements.
        Parameters:
        samRecord - The read to investigate
        Returns:
        The number of bases associated with I and D CIGAR elements, or null if the evaluation of either operation caused an error
      • getSuffix

        public String getSuffix()