Package picard.filter

Class CountingAdapterFilter

  • All Implemented Interfaces:
    htsjdk.samtools.filter.SamRecordFilter

    public class CountingAdapterFilter
    extends CountingFilter
    Counting filter that discards reads are unaligned or aligned with MQ==0 and whose 5' ends look like adapter Sequence
    • Constructor Detail

      • CountingAdapterFilter

        public CountingAdapterFilter()
    • Method Detail

      • reallyFilterOut

        public boolean reallyFilterOut​(htsjdk.samtools.SAMRecord record)
        Description copied from class: CountingFilter
        Return true if we are to filter this record out, false otherwise.
        Specified by:
        reallyFilterOut in class CountingFilter