Package picard.sam.SamErrorMetric
Class ReadBaseStratification.PairStratifier<T extends Comparable<T>,R extends Comparable<R>>
- java.lang.Object
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- picard.sam.SamErrorMetric.ReadBaseStratification.PairStratifier<T,R>
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- All Implemented Interfaces:
ReadBaseStratification.RecordAndOffsetStratifier<Pair<T,R>>
- Enclosing class:
- ReadBaseStratification
public static class ReadBaseStratification.PairStratifier<T extends Comparable<T>,R extends Comparable<R>> extends Object implements ReadBaseStratification.RecordAndOffsetStratifier<Pair<T,R>>
A PairStratifier is a stratifier that uses two other stratifiers to inform the stratification. For a given input, the result is thePair
of outputs that the two stratifiers return. The suffix for this stratifier is generated from the suffixes of the two provided stratifiers.
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Constructor Summary
Constructors Constructor Description PairStratifier(ReadBaseStratification.RecordAndOffsetStratifier<T> a, ReadBaseStratification.RecordAndOffsetStratifier<R> b)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getSuffix()
Pair<T,R>
stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
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Constructor Detail
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PairStratifier
public PairStratifier(ReadBaseStratification.RecordAndOffsetStratifier<T> a, ReadBaseStratification.RecordAndOffsetStratifier<R> b)
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Method Detail
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stratify
public Pair<T,R> stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
- Specified by:
stratify
in interfaceReadBaseStratification.RecordAndOffsetStratifier<T extends Comparable<T>>
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getSuffix
public String getSuffix()
- Specified by:
getSuffix
in interfaceReadBaseStratification.RecordAndOffsetStratifier<T extends Comparable<T>>
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